Module Reference
================

Complete API reference for all CAIS modules. This documentation is automatically generated from the source code docstrings.

.. toctree::
   :maxdepth: 3
   :caption: Core Modules

   causal_agent
   components
   tools
   utils

.. toctree::
   :maxdepth: 3
   :caption: Causal Inference Methods

   methods

Core Modules
------------

**causal_agent**
   Main entry point and high-level interface for causal analysis.

**components**
   Core analysis components including dataset analysis, method selection, and result interpretation.

**methods**
   Implementation of all causal inference methods organized by category.

**tools**
   Analysis tools and utilities for data processing and validation.

**utils**
   Helper functions and utilities used throughout the codebase.

Auto-Generated Documentation
----------------------------

This API reference is automatically generated from the source code using Sphinx autodoc. The documentation includes:

* **Function signatures** with parameter types and return values
* **Detailed docstrings** with usage examples
* **Cross-references** to related functions and classes
* **Source code links** for implementation details

Navigation
----------

* Use the sidebar to navigate between modules
* Click on class or function names for detailed documentation
* Use the search function to find specific APIs
* Follow cross-references to explore related functionality

Code Examples
-------------

Each API entry includes usage examples where appropriate. For more comprehensive examples, see:

* :doc:`../../tutorials/examples/index` - Focused code examples
* :doc:`../../tutorials/notebooks/index` - Interactive tutorials
* :doc:`../../tutorials/case_studies/index` - Complete case studies